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GrainGenes Marker Report: POPA3_0084

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Locus	POPA3_0084
Type	SNP
Synonym	Synonym 12_30084
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 126.27 Hordeum-OPA123-2008-3H 126.27 Hordeum-OPAConsensus-2011-3H 134.71 Hordeum-OWB-OPA2008-3H 149.378
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_16066
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0084 Marker name in barley OPA1 = 12_30084 Original SNP name = ABC07681_1_539 Most representative HarvEST:Barley Assembly #32 Unigene = 5800 Most representative HarvEST:Barley Assembly #35 Unigene = 16066 HarvEST Unigene 35 Probe Set = Contig7681_s_at Unigene 35 Rice Locus = LOC_Os01g66110 Description for best rice BLAST hit to Unigene 35 member = ankyrin-like protein, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0084 Marker name in barley OPA2 = 12_30084 Original SNP name = SCRI_abc21044_01_1 Description for best rice BLAST hit to Unigene 35 member = protein ankyrin-like protein, putative, expressed; E value = 0 BLAST hit in the rice genome = ankyrin-like protein, putative, expressed
Probe for Locus	HAR35_16066
Locus	POPA3_0084
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare