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GrainGenes Marker Report: POPA3_0088

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Locus
POPA3_0088
Type
SNP
Synonym
Other name12_30088
BOPA2_12_30088
Synonym12_30088
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H64.19
Hordeum-OPA123-2008-3H64.19
Hordeum-OPAConsensus-2011-3H75.27
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_17316
i_12_30088
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0088
Marker name in barley OPA1 = 12_30088
Original SNP name = ABC07831_1_419
Most representative HarvEST:Barley Assembly #32 Unigene = 5720
Most representative HarvEST:Barley Assembly #35 Unigene = 17316
HarvEST Unigene 35 Probe Set = Contig7831_at
Unigene 35 Rice Locus = LOC_Os01g50760
Description for best rice BLAST hit to Unigene 35 member = farnesyl pyrophosphate synthetase, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0088
Marker name in barley OPA2 = 12_30088
Description for best rice BLAST hit to Unigene 35 member = protein farnesyl pyrophosphate synthetase, putative, expressed; E value = 0
BLAST hit in the rice genome = farnesyl pyrophosphate synthetase, putative, expressed


Probe for Locus
HAR35_17316
Locus
POPA3_0088
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare