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GrainGenes Marker Report: POPA3_0095

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Locus	POPA3_0095
Type	SNP
Synonym	Other name 12_30095 BOPA2_12_30095 Synonym 12_30095
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 102.49 Hordeum-OPA123-2008-2H 102.49 Hordeum-OPAConsensus-2011-2H 117.17 Hordeum-OWB-OPA2008-2H 121.168
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3119 i_12_30095
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_0095 Marker name in barley OPA1 = 12_30095 Original SNP name = ABC08156_1_83 Most representative HarvEST:Barley Assembly #32 Unigene = 5932 Most representative HarvEST:Barley Assembly #35 Unigene = 3119 HarvEST Unigene 35 Probe Set = Contig8156_at; HW01M18u_s_at Unigene 35 Rice Locus = LOC_Os08g01620 Description for best rice BLAST hit to Unigene 35 member = shwachman-Bodian-Diamond syndrome protein, putative, expressed; E value = 1E-158 Marker name in barley Pilot OPA3 = 3_0095 Marker name in barley OPA2 = 12_30095 Original SNP name = U32_3207_632 HarvEST Unigene 35 Probe Set = Contig8156_at, HW01M18u_s_at Description for best rice BLAST hit to Unigene 35 member = protein shwachman-Bodian-Diamond syndrome protein, putative, expressed; E value = 1E-158 BLAST hit in the rice genome = shwachman-Bodian-Diamond syndrome protein, putative, expressed
Probe for Locus	HAR35_3119
Locus	POPA3_0095
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare