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GrainGenes Marker Report: POPA3_0102

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Locus	POPA3_0102
Type	SNP
Synonym	Synonym 12_30102
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 160.29 Hordeum-OPA123-2008-2H 160.29 Hordeum-OPAConsensus-2011-2H 172.92 Hordeum-OWB-OPA2008-2H 190.092
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_17805
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0102 Marker name in barley OPA1 = 12_30102 Original SNP name = ABC08520_1_180 Most representative HarvEST:Barley Assembly #32 Unigene = 6562 Most representative HarvEST:Barley Assembly #35 Unigene = 17805 HarvEST Unigene 35 Probe Set = Contig8520_at; Contig8521_s_at Unigene 35 Rice Locus = LOC_Os04g59520 Marker name in barley Pilot OPA3 = 3_0102 Marker name in barley OPA2 = 12_30102 HarvEST Unigene 35 Probe Set = Contig8520_at, Contig8521_s_at Description for best rice BLAST hit to Unigene 35 member = protein phosphoribosylanthranilate transferase, putative, expressed; E value = 0 BLAST hit in the rice genome = phosphoribosylanthranilate transferase, putative, expressed
Probe for Locus	HAR35_17805
Locus	POPA3_0102
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare