Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0115

[Submit comment/correction]

Locus	POPA3_0115
Type	SNP
Synonym	Other name 12_30115 BOPA2_12_30115 Synonym 12_30115
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_15775 i_12_30115
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0115 Marker name in barley OPA1 = 12_30115 Original SNP name = ABC09200_1_62 Most representative HarvEST:Barley Assembly #32 Unigene = 6686 Most representative HarvEST:Barley Assembly #35 Unigene = 15775 HarvEST Unigene 35 Probe Set = Contig9200_at Unigene 35 Rice Locus = LOC_Os05g31750 Description for best rice BLAST hit to Unigene 35 member = annexin-like protein RJ4, putative, expressed; E value = 1E-150 BLAST hit in the rice genome = annexin-like protein RJ4, putative, expressed
Probe for Locus	HAR35_15775
Locus	POPA3_0115