Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0118

[Submit comment/correction]

Locus	POPA3_0118
Type	SNP
Synonym	Other name 12_30118 BOPA2_12_30118 Synonym 12_30118
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_2554 i_12_30118
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0118 Marker name in barley OPA1 = 12_30118 Original SNP name = ABC09276_1_59 Most representative HarvEST:Barley Assembly #32 Unigene = 7107 Most representative HarvEST:Barley Assembly #35 Unigene = 2554 HarvEST Unigene 35 Probe Set = Contig9276_at; Contig9277_s_at; HVSMEb0013I22f_s_at Unigene 35 Rice Locus = LOC_Os05g02130 Description for best rice BLAST hit to Unigene 35 member = ankyrin repeat domain-containing protein 28, putative, expressed; E value = 0 BLAST hit in the rice genome = ankyrin repeat domain-containing protein 28, putative, expressed
Probe for Locus	HAR35_2554
Locus	POPA3_0118 POPA3_0955 POPA3_0954
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare