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GrainGenes Marker Report: POPA3_0136

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Locus	POPA3_0136
Type	SNP
Synonym	Other name 12_30136 BOPA2_12_30136 Synonym 12_30136
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 77.31 Hordeum-OPA123-2008-4H 77.31 Hordeum-OPAConsensus-2011-4H 86.01
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18806 i_12_30136
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0136 Marker name in barley OPA1 = 12_30136 Original SNP name = ABC09988_1_744 Most representative HarvEST:Barley Assembly #32 Unigene = 7689 Most representative HarvEST:Barley Assembly #35 Unigene = 18806 HarvEST Unigene 35 Probe Set = Contig9988_at Unigene 35 Rice Locus = LOC_Os03g05780 Description for best rice BLAST hit to Unigene 35 member = 4-coumarate--CoA ligase 2, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0136 Marker name in barley OPA2 = 12_30136 Description for best rice BLAST hit to Unigene 35 member = protein 4-coumarate--CoA ligase 2, putative, expressed; E value = 0 BLAST hit in the rice genome = 4-coumarate--CoA ligase 2, putative, expressed
Probe for Locus	HAR35_18806
Locus	POPA3_0136
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare