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GrainGenes Marker Report: POPA3_0151

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Locus
POPA3_0151
Type
SNP
Synonym
Other name12_30151
BOPA2_12_30151
Synonym12_30151
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H97.39
Hordeum-OPA123-2008-6H97.39
Hordeum-OPAConsensus-2011-6H111.08
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4402
i_12_30151
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_0151
Marker name in barley OPA1 = 12_30151
Original SNP name = ABC10672_1_220
Most representative HarvEST:Barley Assembly #32 Unigene = 7876
Most representative HarvEST:Barley Assembly #35 Unigene = 4402
HarvEST Unigene 35 Probe Set = Contig10672_at; HD13B05r_s_at
Unigene 35 Rice Locus = LOC_Os08g33710
Description for best rice BLAST hit to Unigene 35 member = ribonuclease 3 precursor, putative, expressed; E value = 1E-102
Marker name in barley Pilot OPA3 = 3_0151
Marker name in barley OPA2 = 12_30151
HarvEST Unigene 35 Probe Set = Contig10672_at, HD13B05r_s_at
Description for best rice BLAST hit to Unigene 35 member = protein ribonuclease 3 precursor, putative, expressed; E value = 1E-102
BLAST hit in the rice genome = ribonuclease 3 precursor, putative, expressed


Probe for Locus
HAR35_4402
Locus
POPA3_0151
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare