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GrainGenes Marker Report: POPA3_0178

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Locus	POPA3_0178
Type	SNP
Synonym	Synonym 12_30178
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 75.89 Hordeum-OPA123-2008-2H 75.89 Hordeum-OPAConsensus-2011-2H 87.25 Hordeum-OWB-OPA2008-2H 91.377
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_5380
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0178 Marker name in barley OPA1 = 12_30178 Original SNP name = ABC11711_1_344 Most representative HarvEST:Barley Assembly #32 Unigene = 9044 Most representative HarvEST:Barley Assembly #35 Unigene = 5380 HarvEST Unigene 35 Probe Set = Contig11711_at Unigene 35 Rice Locus = LOC_Os04g43070 Description for best rice BLAST hit to Unigene 35 member = ammonium transporter 1, member 2, putative, expressed; E value = 1E-109 Marker name in barley Pilot OPA3 = 3_0178 Marker name in barley OPA2 = 12_30178 Description for best rice BLAST hit to Unigene 35 member = protein ammonium transporter 1, member 2, putative, expressed; E value = 1E-109 BLAST hit in the rice genome = ammonium transporter 1, member 2, putative, expressed
Probe for Locus	HAR35_5380
Locus	POPA3_0178
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare