Query (optional)   in Class  

GrainGenes Marker Report: POPA3_0182

[Submit comment/correction]

Locus
POPA3_0182
Type
SNP
Synonym
Other name12_30182
BOPA2_12_30182
Synonym12_30182
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H101.71
Hordeum-OPA123-2008-5H101.71
Hordeum-OWB-OPA2008-5H115.947
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_3574
i_12_30182
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 3_0182
Marker name in barley OPA1 = 12_30182
Original SNP name = ABC11766_1_260
Most representative HarvEST:Barley Assembly #32 Unigene = 9326
Most representative HarvEST:Barley Assembly #35 Unigene = 3574
HarvEST Unigene 35 Probe Set = Contig11766_at
Unigene 35 Rice Locus = LOC_Os09g32840
Marker name in barley Pilot OPA3 = 3_0182
Marker name in barley OPA2 = 12_30182
Description for best rice BLAST hit to Unigene 35 member = protein nucleotide pyrophosphatase/phosphodiesterase, putative, expressed; E value = 0
BLAST hit in the rice genome = nucleotide pyrophosphatase/phosphodiesterase, putative, expressed


Probe for Locus
HAR35_3574
Locus
POPA3_0182
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare