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GrainGenes Marker Report: POPA3_0204

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Locus
POPA3_0204
Type
SNP
Synonym
Synonym12_30204
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H86.19
Hordeum-OPA123-2008-1H86.19
Hordeum-OPAConsensus-2011-1H89.77
Hordeum-OWB-OPA2008-1H98.655
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_5017
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0204
Marker name in barley OPA1 = 12_30204
Original SNP name = ABC12677_2_128
Most representative HarvEST:Barley Assembly #32 Unigene = 9807
Most representative HarvEST:Barley Assembly #35 Unigene = 5017
HarvEST Unigene 35 Probe Set = Contig12677_at
Unigene 35 Rice Locus = LOC_Os05g38590
Description for best rice BLAST hit to Unigene 35 member = protein tyrosine phosphatase-like protein PTPLB, putative, expressed; E value = 1E-105
Marker name in barley Pilot OPA3 = 3_0204
Marker name in barley OPA2 = 12_30204
Description for best rice BLAST hit to Unigene 35 member = protein protein tyrosine phosphatase-like protein PTPLB, putative, expressed; E value = 1E-105
BLAST hit in the rice genome = protein tyrosine phosphatase-like protein PTPLB, putative, expressed


Probe for Locus
HAR35_5017
Locus
POPA3_0204
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare