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GrainGenes Marker Report: POPA3_0219

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Locus
POPA3_0219
Type
SNP
Synonym
Other name12_30219
BOPA2_12_30219
Synonym12_30219
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H34.82
Hordeum-OPA123-2008-7H34.82
Hordeum-OPAConsensus-2011-7H29.05
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_5866
i_12_30219
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_0219
Marker name in barley OPA1 = 12_30219
Original SNP name = ABC13623_1_608
Most representative HarvEST:Barley Assembly #32 Unigene = 10733
Most representative HarvEST:Barley Assembly #35 Unigene = 5866
HarvEST Unigene 35 Probe Set = Contig13623_at
Unigene 35 Rice Locus = LOC_Os11g03290
Description for best rice BLAST hit to Unigene 35 member = nucleoside-triphosphatase, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0219
Marker name in barley OPA2 = 12_30219
Original SNP name = ABC07661_1_707
Description for best rice BLAST hit to Unigene 35 member = protein nucleoside-triphosphatase, putative, expressed; E value = 0
BLAST hit in the rice genome = nucleoside-triphosphatase, putative, expressed


Probe for Locus
HAR35_5866
Locus
POPA3_0219
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare