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GrainGenes Marker Report: POPA3_0222

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Locus	POPA3_0222
Type	SNP
Synonym	Other name 12_30222 BOPA2_12_30222 Synonym 12_30222
QTL with Locus Marker	MQTL_Du2024.yield-5H.8
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_20026 i_12_30222
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0222 Marker name in barley OPA1 = 12_30222 Original SNP name = ABC13835_1_1_51 Most representative HarvEST:Barley Assembly #32 Unigene = 10178 Most representative HarvEST:Barley Assembly #35 Unigene = 20026 HarvEST Unigene 35 Probe Set = Contig13835_at Unigene 35 Rice Locus = LOC_Os03g55590 Description for best rice BLAST hit to Unigene 35 member = DNA binding protein, putative, expressed; E value = 6E-53 BLAST hit in the rice genome = DNA binding protein, putative, expressed
Probe for Locus	HAR35_20026
Locus	POPA3_0222