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GrainGenes Marker Report: POPA3_0237

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Locus	POPA3_0237
Type	SNP
Synonym	Synonym 12_30237
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 61.04 Hordeum-OPA123-2008-4H 61.04 Hordeum-OPAConsensus-2011-4H 70.77
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_20484
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0237 Marker name in barley OPA1 = 12_30237 Original SNP name = ABC14854_1_190 Most representative HarvEST:Barley Assembly #32 Unigene = 11520 Most representative HarvEST:Barley Assembly #35 Unigene = 20484 HarvEST Unigene 35 Probe Set = Contig14854_at Unigene 35 Rice Locus = LOC_Os03g15570 Description for best rice BLAST hit to Unigene 35 member = mitogen-activated protein kinase 1, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0237 Marker name in barley OPA2 = 12_30237 Description for best rice BLAST hit to Unigene 35 member = protein mitogen-activated protein kinase 1, putative, expressed; E value = 0 BLAST hit in the rice genome = mitogen-activated protein kinase 1, putative, expressed
Probe for Locus	HAR35_20484
Locus	POPA3_0237
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare