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GrainGenes Marker Report: POPA3_0240

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Locus
POPA3_0240
Type
SNP
Synonym
Other name12_30240
BOPA2_12_30240
Synonym12_30240
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_5423
i_12_30240
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
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Marker name in barley Pilot OPA1 = 3_0240
Marker name in barley OPA1 = 12_30240
Original SNP name = ABC15150_1_139
Most representative HarvEST:Barley Assembly #32 Unigene = 11583
Most representative HarvEST:Barley Assembly #35 Unigene = 5423
HarvEST Unigene 35 Probe Set = Contig15150_at; HS05N06r_s_at
Unigene 35 Rice Locus = LOC_Os04g58710
Description for best rice BLAST hit to Unigene 35 member = peroxisomal-coenzyme A synthetase, putative, expressed; E value = 5E-85
BLAST hit in the rice genome = peroxisomal-coenzyme A synthetase, putative, expressed



Probe for Locus
HAR35_5423
Locus
POPA3_0240