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GrainGenes Marker Report: POPA3_0244

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Locus
POPA3_0244
Type
SNP
Synonym
Synonym12_30244
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H151.35
Hordeum-OPA123-2008-7H151.35
Hordeum-OPAConsensus-2011-7H153.91
Hordeum-OWB-OPA2008-7H171.519
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_20834
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0244
Marker name in barley OPA1 = 12_30244
Original SNP name = ABC15259_3_1022
Most representative HarvEST:Barley Assembly #32 Unigene = 11725
Most representative HarvEST:Barley Assembly #35 Unigene = 20834
HarvEST Unigene 35 Probe Set = Contig15259_at
Unigene 35 Rice Locus = LOC_Os06g50930
Description for best rice BLAST hit to Unigene 35 member = senescence-associated protein DIN1, putative, expressed; E value = 4E-59
Marker name in barley Pilot OPA3 = 3_0244
Marker name in barley OPA2 = 12_30244
Description for best rice BLAST hit to Unigene 35 member = protein senescence-associated protein DIN1, putative, expressed; E value = 4E-59
BLAST hit in the rice genome = senescence-associated protein DIN1, putative, expressed


Probe for Locus
HAR35_20834
Locus
POPA3_0244
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare