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GrainGenes Marker Report: POPA3_0258

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Locus	POPA3_0258
Type	SNP
Synonym	Synonym ABG494
Chromosome	1H
Chromosome Arm	1HS
Map	Barley-Core-2014_1H 50 Hordeum-OPA-2009-1H 49.7 Hordeum-OPA123-2008-1H 49.7 Hordeum-OPAConsensus-2011-1H 45.2 Hordeum-OWB-OPA2008-1H 57.714
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_8281
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0258 Most representative HarvEST:Barley Assembly #32 Unigene = 15248 Most representative HarvEST:Barley Assembly #35 Unigene = 8281 HarvEST Unigene 35 Probe Set = Contig16875_at Unigene 35 Rice Locus = LOC_Os05g05590 Description for best rice BLAST hit to Unigene 35 member = sodium/hydrogen exchanger 2, putative, expressed; E value = 1E-129 Marker name in barley Pilot OPA3 = 3_0258 Description for best rice BLAST hit to Unigene 35 member = protein sodium/hydrogen exchanger 2, putative, expressed; E value = 1E-129 BLAST hit in the rice genome = sodium/hydrogen exchanger 2, putative, expressed
Probe for Locus	HAR35_8281
Locus	POPA3_0258
Synonym	Synonym ABG494
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare