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GrainGenes Marker Report: POPA3_0304

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Locus	POPA3_0304
Type	SNP
Synonym	Other name 12_30304 BOPA2_12_30304 Synonym 12_30304
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 57.3 Hordeum-OPA-2009-1H 61.53 Hordeum-OPA123-2008-1H 61.53 Hordeum-OPAConsensus-2011-1H 59.29 Hordeum-OWB-OPA2008-1H 68.656
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_19877 i_12_30304
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0304 Marker name in barley OPA1 = 12_30304 Original SNP name = U32_10148_338 Most representative HarvEST:Barley Assembly #32 Unigene = 10148 Most representative HarvEST:Barley Assembly #35 Unigene = 19877 HarvEST Unigene 35 Probe Set = Contig12707_at; HVSMEk0004F18f2_s_at Unigene 35 Rice Locus = LOC_Os05g28480 Description for best rice BLAST hit to Unigene 35 member = conserved hypothetical protein; E value = 2E-33 Marker name in barley Pilot OPA3 = 3_0304 Marker name in barley OPA2 = 12_30304 HarvEST Unigene 35 Probe Set = Contig12707_at, HVSMEk0004F18f2_s_at Description for best rice BLAST hit to Unigene 35 member = protein conserved hypothetical protein; E value = 2E-33 BLAST hit in the rice genome = conserved hypothetical protein
Probe for Locus	HAR35_19877
Locus	POPA3_0304
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare