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GrainGenes Marker Report: POPA3_0325

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Locus	POPA3_0325
Type	SNP
Synonym	Other name 12_30325 BOPA2_12_30325 Synonym 12_30325
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 77.1 Hordeum-OPA-2009-3H 90.48 Hordeum-OPA123-2008-3H 90.48 Hordeum-OPAConsensus-2011-3H 101.37 Hordeum-OWB-OPA2008-3H 100.529
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_5451 i_12_30325
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0325 Marker name in barley OPA1 = 12_30325 Original SNP name = U32_10917_237 Most representative HarvEST:Barley Assembly #32 Unigene = 10917 Most representative HarvEST:Barley Assembly #35 Unigene = 5451 HarvEST Unigene 35 Probe Set = Contig13630_at Unigene 35 Rice Locus = LOC_Os01g60200 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-54 Marker name in barley Pilot OPA3 = 3_0325 Marker name in barley OPA2 = 12_30325 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-54 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_5451
Locus	POPA3_0325
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare