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GrainGenes Marker Report: POPA3_0341

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Locus	POPA3_0341
Type	SNP
Synonym	Other name 12_30341 BOPA2_12_30341 Synonym 12_30341
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 129.3 Hordeum-OPA-2009-2H 137.51 Hordeum-OPA123-2008-2H 137.51 Hordeum-OPAConsensus-2011-2H 154.65
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_7141 i_12_30341
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0341 Marker name in barley OPA1 = 12_30341 Original SNP name = U32_11937_312 Most representative HarvEST:Barley Assembly #32 Unigene = 11937 Most representative HarvEST:Barley Assembly #35 Unigene = 7141 HarvEST Unigene 35 Probe Set = Contig14767_at Unigene 35 Rice Locus = LOC_Os12g26060 Description for best rice BLAST hit to Unigene 35 member = bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed; E value = 1E-133 Marker name in barley Pilot OPA3 = 3_0341 Marker name in barley OPA2 = 12_30341 Description for best rice BLAST hit to Unigene 35 member = protein bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed; E value = 1E-133 BLAST hit in the rice genome = bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
Probe for Locus	HAR35_7141
Locus	POPA3_0341
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare