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GrainGenes Marker Report: POPA3_0343

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Locus
POPA3_0343
Type
SNP
Synonym
Other name12_30343
BOPA2_12_30343
Synonym12_30343
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H51.6
Hordeum-OPA-2009-1H58.9
Hordeum-OPA123-2008-1H58.9
Hordeum-OPAConsensus-2011-1H51.91
Hordeum-OWB-OPA2008-1H64.284
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_6609
i_12_30343
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0343
Marker name in barley OPA1 = 12_30343
Original SNP name = U32_12084_521
Most representative HarvEST:Barley Assembly #32 Unigene = 12084
Most representative HarvEST:Barley Assembly #35 Unigene = 6609
HarvEST Unigene 35 Probe Set = Contig14706_at
Unigene 35 Rice Locus = LOC_Os02g17850
Description for best rice BLAST hit to Unigene 35 member = TOM2B, putative, expressed; E value = 2E-49
Marker name in barley Pilot OPA3 = 3_0343
Marker name in barley OPA2 = 12_30343
Description for best rice BLAST hit to Unigene 35 member = protein TOM2B, putative, expressed; E value = 2E-49
BLAST hit in the rice genome = TOM2B, putative, expressed



Probe for Locus
HAR35_6609
Locus
POPA3_0343
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare