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GrainGenes Marker Report: POPA3_0362

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Locus	POPA3_0362
Type	SNP
Synonym	Other name 12_30362 BOPA2_12_30362 Synonym 12_30362
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 104.8 Hordeum-OPA-2009-7H 114.78 Hordeum-OPA123-2008-7H 114.78 Hordeum-OPAConsensus-2011-7H 114.96
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_7035 i_12_30362
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0362 Marker name in barley OPA1 = 12_30362 Original SNP name = U32_13417_246 Most representative HarvEST:Barley Assembly #32 Unigene = 13417 Most representative HarvEST:Barley Assembly #35 Unigene = 7035 HarvEST Unigene 35 Probe Set = Contig15791_at; Contig15791_s_at Unigene 35 Rice Locus = LOC_Os12g13950 Marker name in barley Pilot OPA3 = 3_0362 Marker name in barley OPA2 = 12_30362 HarvEST Unigene 35 Probe Set = Contig15791_at, Contig15791_s_at Description for best rice BLAST hit to Unigene 35 member = protein DNA polymerase alpha subunit B, putative, expressed; E value = 2E-26 BLAST hit in the rice genome = DNA polymerase alpha subunit B, putative, expressed
Probe for Locus	HAR35_7035
Locus	POPA3_0362
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare