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GrainGenes Marker Report: POPA3_0380

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Locus	POPA3_0380
Type	SNP
Synonym	Other name 12_30380 BOPA2_12_30380 Synonym 12_30380
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 124.6 Hordeum-OPA-2009-7H 138.17 Hordeum-OPA123-2008-7H 138.17 Hordeum-OPAConsensus-2011-7H 136.56 Hordeum-OWB-OPA2008-7H 159.465
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14881 i_12_30380
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0380 Marker name in barley OPA1 = 12_30380 Original SNP name = U32_1480_347 Most representative HarvEST:Barley Assembly #32 Unigene = 1480 Most representative HarvEST:Barley Assembly #35 Unigene = 14881 HarvEST Unigene 35 Probe Set = Contig1362_at; Contig1362_s_at Unigene 35 Rice Locus = LOC_Os02g27769 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein S27, putative, expressed; E value = 7E-46 Marker name in barley Pilot OPA3 = 3_0380 Marker name in barley OPA2 = 12_30380 HarvEST Unigene 35 Probe Set = Contig1362_at, Contig1362_s_at Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein S27, putative, expressed; E value = 7E-46 BLAST hit in the rice genome = 40S ribosomal protein S27, putative, expressed
Probe for Locus	HAR35_14881
Locus	POPA3_0380
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare