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GrainGenes Marker Report: POPA3_0382

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Locus	POPA3_0382
Type	SNP
Synonym	Other name 12_30382 BOPA2_12_30382 Synonym 12_30382
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 169.4 Hordeum-OPA-2009-5H 194.64 Hordeum-OPA123-2008-5H 194.64 Hordeum-OPAConsensus-2011-5H 188.04
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_8018 i_12_30382
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0382 Marker name in barley OPA1 = 12_30382 Original SNP name = U32_14865_225 Most representative HarvEST:Barley Assembly #32 Unigene = 14865 Most representative HarvEST:Barley Assembly #35 Unigene = 8018 HarvEST Unigene 35 Probe Set = Contig18528_at; HT05J04u_s_at; HVSMEk0004C11r2_s_at Unigene 35 Rice Locus = LOC_Os06g27890 Description for best rice BLAST hit to Unigene 35 member = OsMKK3 - putative MAPKK based on amino acid sequence homology, expressed; E value = 7E-40 Marker name in barley Pilot OPA3 = 3_0382 Marker name in barley OPA2 = 12_30382 HarvEST Unigene 35 Probe Set = Contig18528_at, HT05J04u_s_at, HVSMEk0004C11r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein OsMKK3 - putative MAPKK based on amino acid sequence homology, expressed; E value = 7E-40 BLAST hit in the rice genome = OsMKK3 - putative MAPKK based on amino acid sequence homology, expressed
Probe for Locus	HAR35_8018
Locus	POPA3_0382
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare