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GrainGenes Marker Report: POPA3_0388

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Locus	POPA3_0388
Type	SNP
Synonym	Other name 12_30388 BOPA2_12_30388 Synonym 12_30388
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_22862 i_12_30388
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0388 Marker name in barley OPA1 = 12_30388 Original SNP name = U32_15334_244 Most representative HarvEST:Barley Assembly #32 Unigene = 15334 Most representative HarvEST:Barley Assembly #35 Unigene = 22862 HarvEST Unigene 35 Probe Set = Contig17082_at Unigene 35 Rice Locus = LOC_Os03g60840 Description for best rice BLAST hit to Unigene 35 member = Bowman-Birk type trypsin inhibitor, putative, expressed; E value = 2E-22 BLAST hit in the rice genome = Bowman-Birk type trypsin inhibitor, putative, expressed
Probe for Locus	HAR35_22862
Locus	POPA3_0388