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GrainGenes Marker Report: POPA3_0390

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Locus
POPA3_0390
Type
SNP
Synonym
Other name12_30390
BOPA2_12_30390
Synonym12_30390
Chromosome
4H
Chromosome Arm
4HL
Map
Hordeum-OPA-2009-4H84.3
Hordeum-OPA123-2008-4H84.3
Hordeum-OPAConsensus-2011-4H93.08
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_14967
i_12_30390
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0390
Marker name in barley OPA1 = 12_30390
Original SNP name = U32_1550_1487
Most representative HarvEST:Barley Assembly #32 Unigene = 1550
Most representative HarvEST:Barley Assembly #35 Unigene = 14967
HarvEST Unigene 35 Probe Set = Contig2268_s_at
Unigene 35 Rice Locus = LOC_Os03g58204
Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L4, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0390
Marker name in barley OPA2 = 12_30390
Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L4, putative, expressed; E value = 0
BLAST hit in the rice genome = 60S ribosomal protein L4, putative, expressed


Probe for Locus
HAR35_14967
Locus
POPA3_0390
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare