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GrainGenes Marker Report: POPA3_0395

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Locus	POPA3_0395
Type	SNP
Synonym	Other name 12_30395 BOPA2_12_30395 Synonym 12_30395
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 55.7 Hordeum-OPA-2009-6H 55.94 Hordeum-OPA123-2008-6H 55.94 Hordeum-OPAConsensus-2011-6H 60.65
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15472 i_12_30395
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_0395 Marker name in barley OPA1 = 12_30395 Original SNP name = U32_1708_1373 Most representative HarvEST:Barley Assembly #32 Unigene = 1708 Most representative HarvEST:Barley Assembly #35 Unigene = 15472 HarvEST Unigene 35 Probe Set = Contig2526_at; HV_CEa0002J17f2_s_at; HV_CEa0002J17r2_at Unigene 35 Rice Locus = LOC_Os02g40830 Description for best rice BLAST hit to Unigene 35 member = succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0395 Marker name in barley OPA2 = 12_30395 Original SNP name = U32_2959_1255 HarvEST Unigene 35 Probe Set = Contig2526_at, HV_CEa0002J17f2_s_at, HV_CEa0002J17r2_at Description for best rice BLAST hit to Unigene 35 member = protein succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_15472
Locus	POPA3_0395
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare