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GrainGenes Marker Report: POPA3_0396

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Locus	POPA3_0396
Type	SNP
Synonym	Other name 12_30396 BOPA2_12_30396 Synonym 12_30396 BCD266
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 133.94 Hordeum-OPA123-2008-2H 133.94 Hordeum-OPAConsensus-2011-2H 151.92 Hordeum-OWB-OPA2008-2H 159.052
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_15016 i_12_30396
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_0396 Marker name in barley OPA1 = 12_30396 Original SNP name = U32_1731_424 Most representative HarvEST:Barley Assembly #32 Unigene = 1731 Most representative HarvEST:Barley Assembly #35 Unigene = 15016 HarvEST Unigene 35 Probe Set = Contig2554_at; Contig2556_s_at; HVSMEn0023O21f_s_at Unigene 35 Rice Locus = LOC_Os04g55650 Description for best rice BLAST hit to Unigene 35 member = cysteine proteinase RD21a precursor, putative, expressed; E value = 5E-38 Marker name in barley Pilot OPA3 = 3_0396 Marker name in barley OPA2 = 12_30396 Original SNP name = ABC08739_1_112 HarvEST Unigene 35 Probe Set = Contig2554_at, Contig2556_s_at, HVSMEn0023O21f_s_at Description for best rice BLAST hit to Unigene 35 member = protein cysteine proteinase RD21a precursor, putative, expressed; E value = 5E-38 BLAST hit in the rice genome = cysteine proteinase RD21a precursor, putative, expressed
Probe for Locus	HAR35_15016
Locus	POPA3_0396
Synonym	Synonym BCD266
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare