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GrainGenes Marker Report: POPA3_0404

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Locus	POPA3_0404
Type	SNP
Synonym	Other name 12_30404 BOPA2_12_30404 Synonym 12_30404
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 48.1 Hordeum-OPA-2009-1H 50.6 Hordeum-OPA123-2008-1H 50.6 Hordeum-OPAConsensus-2011-1H 42.42
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14487 i_12_30404
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0404 Marker name in barley OPA1 = 12_30404 Original SNP name = U32_1867_673 Most representative HarvEST:Barley Assembly #32 Unigene = 1867 Most representative HarvEST:Barley Assembly #35 Unigene = 14487 HarvEST Unigene 35 Probe Set = Contig2766_s_at Unigene 35 Rice Locus = LOC_Os10g35370 Description for best rice BLAST hit to Unigene 35 member = protochlorophyllide reductase B, chloroplast precursor, putative, expressed; E value = 2E-96 Marker name in barley Pilot OPA3 = 3_0404 Marker name in barley OPA2 = 12_30404 Description for best rice BLAST hit to Unigene 35 member = protein protochlorophyllide reductase B, chloroplast precursor, putative, expressed; E value = 2E-96 BLAST hit in the rice genome = protochlorophyllide reductase B, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_14487
Locus	POPA3_0404
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare