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GrainGenes Marker Report: POPA3_0406

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Locus
POPA3_0406
Type
SNP
Synonym
Other name12_30406
BOPA2_12_30406
Synonym12_30406
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H49.1
Hordeum-OPA-2009-1H55.49
Hordeum-OPA123-2008-1H55.49
Hordeum-OPAConsensus-2011-1H45.2
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15128
i_12_30406
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0406
Marker name in barley OPA1 = 12_30406
Original SNP name = U32_1918_240
Most representative HarvEST:Barley Assembly #32 Unigene = 1918
Most representative HarvEST:Barley Assembly #35 Unigene = 15128
HarvEST Unigene 35 Probe Set = Contig2822_s_at
Unigene 35 Rice Locus = LOC_Os10g42540
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-55
Marker name in barley Pilot OPA3 = 3_0406
Marker name in barley OPA2 = 12_30406
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-55
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_15128
Locus
POPA3_0406
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare