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GrainGenes Marker Report: POPA3_0414

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Locus	POPA3_0414
Type	SNP
Synonym	Synonym 12_30414
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 124.85 Hordeum-OPA123-2008-6H 124.85 Hordeum-OPAConsensus-2011-6H 137.41
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_125
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0414 Marker name in barley OPA1 = 12_30414 Original SNP name = U32_209_201 Most representative HarvEST:Barley Assembly #32 Unigene = 209 Most representative HarvEST:Barley Assembly #35 Unigene = 125 HarvEST Unigene 35 Probe Set = Contig938_s_at Unigene 35 Rice Locus = LOC_Os11g18947 Description for best rice BLAST hit to Unigene 35 member = RHB1A, putative, expressed; E value = 6E-88 Marker name in barley Pilot OPA3 = 3_0414 Marker name in barley OPA2 = 12_30414 Description for best rice BLAST hit to Unigene 35 member = protein RHB1A, putative, expressed; E value = 6E-88 BLAST hit in the rice genome = RHB1A, putative, expressed
Probe for Locus	HAR35_125
Locus	POPA3_0414
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare