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GrainGenes Marker Report: POPA3_0415

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Locus	POPA3_0415
Type	SNP
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Core-2014_5H 153.47 Hordeum-OPA-2009-5H 161.58 Hordeum-OPA123-2008-5H 161.58 Hordeum-OPAConsensus-2011-5H 157.61
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_1104
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_0415 Most representative HarvEST:Barley Assembly #32 Unigene = 2103 Most representative HarvEST:Barley Assembly #35 Unigene = 1104 HarvEST Unigene 35 Probe Set = Contig3059_at Unigene 35 Rice Locus = LOC_Os03g41438 Description for best rice BLAST hit to Unigene 35 member = protein Z, putative, expressed; E value = 1E-146 Marker name in barley Pilot OPA3 = 3_0415 Original SNP name = U32_2103_964 Description for best rice BLAST hit to Unigene 35 member = protein protein Z, putative, expressed; E value = 1E-146 BLAST hit in the rice genome = protein Z, putative, expressed
Probe for Locus	HAR35_1104
Locus	POPA3_0415
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare