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GrainGenes Marker Report: POPA3_0425

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Locus	POPA3_0425
Type	SNP
Synonym	Synonym 12_30425
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 119.09 Hordeum-OPA123-2008-4H 119.09 Hordeum-OPAConsensus-2011-4H 139.97
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_867
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0425 Marker name in barley OPA1 = 12_30425 Original SNP name = U32_2366_688 Most representative HarvEST:Barley Assembly #32 Unigene = 2366 Most representative HarvEST:Barley Assembly #35 Unigene = 867 HarvEST Unigene 35 Probe Set = Contig3439_s_at Unigene 35 Rice Locus = LOC_Os05g25640 Description for best rice BLAST hit to Unigene 35 member = trans-cinnamate 4-monooxygenase, putative, expressed; E value = 1E-168 Marker name in barley Pilot OPA3 = 3_0425 Marker name in barley OPA2 = 12_30425 Original SNP name = OSU_VRN_H2_ZCCT_Hb_1580 Description for best rice BLAST hit to Unigene 35 member = protein trans-cinnamate 4-monooxygenase, putative, expressed; E value = 1E-168 BLAST hit in the rice genome = trans-cinnamate 4-monooxygenase, putative, expressed
Probe for Locus	HAR35_867
Locus	POPA3_0425
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare