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GrainGenes Marker Report: POPA3_0492

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Locus	POPA3_0492
Type	SNP
Synonym	Other name 12_30492 BOPA2_12_30492 Synonym 12_30492
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 70.7 Hordeum-OPA-2009-7H 77.85 Hordeum-OPA123-2008-7H 77.85 Hordeum-OPAConsensus-2011-7H 81.78 Hordeum-OWB-OPA2008-7H 80.664
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_16377 i_12_30492
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0492 Marker name in barley OPA1 = 12_30492 Original SNP name = U32_3471_858 Most representative HarvEST:Barley Assembly #32 Unigene = 3471 Most representative HarvEST:Barley Assembly #35 Unigene = 16377 HarvEST Unigene 35 Probe Set = Contig4909_at; HVSMEb0002H03r2_s_at Unigene 35 Rice Locus = LOC_Os08g44430 Description for best rice BLAST hit to Unigene 35 member = vesicle-associated membrane protein 727, putative, expressed; E value = 1E-125 Marker name in barley Pilot OPA3 = 3_0492 Marker name in barley OPA2 = 12_30492 HarvEST Unigene 35 Probe Set = Contig4909_at, HVSMEb0002H03r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein vesicle-associated membrane protein 727, putative, expressed; E value = 1E-125 BLAST hit in the rice genome = vesicle-associated membrane protein 727, putative, expressed
Probe for Locus	HAR35_16377
Locus	POPA3_0492
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare