Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0502

[Submit comment/correction]

Locus	POPA3_0502
Type	SNP
Synonym	Other name 12_30502 BOPA2_12_30502 Synonym 12_30502
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16209 i_12_30502
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0502 Marker name in barley OPA1 = 12_30502 Original SNP name = U32_3666_1499 Most representative HarvEST:Barley Assembly #32 Unigene = 3666 Most representative HarvEST:Barley Assembly #35 Unigene = 16209 HarvEST Unigene 35 Probe Set = Contig5051_at; HV_CEa0007J13r2_s_at Unigene 35 Rice Locus = LOC_Os03g64320 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-173 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_16209
Locus	POPA3_0502