Query (optional)   in Class  

GrainGenes Marker Report: POPA3_0503

[Submit comment/correction]

Locus
POPA3_0503
Type
SNP
Synonym
Other name12_30503
BOPA2_12_30503
Synonym12_30503
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_16200
i_12_30503
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 9 ]
Marker name in barley Pilot OPA1 = 3_0503
Marker name in barley OPA1 = 12_30503
Original SNP name = U32_3683_1663
Most representative HarvEST:Barley Assembly #32 Unigene = 3683
Most representative HarvEST:Barley Assembly #35 Unigene = 16200
HarvEST Unigene 35 Probe Set = Contig5223_at
Unigene 35 Rice Locus = LOC_Os11g32240
Description for best rice BLAST hit to Unigene 35 member = cytochrome P450 51, putative, expressed; E value = 0
BLAST hit in the rice genome = cytochrome P450 51, putative, expressed



Probe for Locus
HAR35_16200
Locus
POPA3_0503