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GrainGenes Marker Report: POPA3_0507

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Locus
POPA3_0507
Type
SNP
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-Core-2014_3H114.64
Hordeum-OPA-2009-3H127.87
Hordeum-OPA123-2008-3H127.87
Hordeum-OPAConsensus-2011-3H136.18
Hordeum-OWB-OPA2008-3H151.552
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Probe
HAR35_1830
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 3_0507
Most representative HarvEST:Barley Assembly #32 Unigene = 3749
Most representative HarvEST:Barley Assembly #35 Unigene = 1830
HarvEST Unigene 35 Probe Set = Contig5278_at; U19359_s_at
Unigene 35 Rice Locus = LOC_Os01g67980
Description for best rice BLAST hit to Unigene 35 member = cysteine proteinase EP-B 1 precursor, putative, expressed; E value = 1E-153
Marker name in barley Pilot OPA3 = 3_0507
Original SNP name = U32_3749_1258
HarvEST Unigene 35 Probe Set = Contig5278_at, U19359_s_at
Description for best rice BLAST hit to Unigene 35 member = protein cysteine proteinase EP-B 1 precursor, putative, expressed; E value = 1E-153
BLAST hit in the rice genome = cysteine proteinase EP-B 1 precursor, putative, expressed


Probe for Locus
HAR35_1830
Locus
POPA3_0507
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare