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GrainGenes Marker Report: POPA3_0514

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Locus	POPA3_0514
Type	SNP
Synonym	Synonym 12_30514
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 59.9 Hordeum-OPA123-2008-2H 59.9 Hordeum-OPAConsensus-2011-2H 68.07
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_2098
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0514 Marker name in barley OPA1 = 12_30514 Original SNP name = U32_3895_787 Most representative HarvEST:Barley Assembly #32 Unigene = 3895 Most representative HarvEST:Barley Assembly #35 Unigene = 2098 HarvEST Unigene 35 Probe Set = Contig5485_at Unigene 35 Rice Locus = LOC_Os07g05810 Description for best rice BLAST hit to Unigene 35 member = glycine-rich protein, putative, expressed; E value = 1E-143 Marker name in barley Pilot OPA3 = 3_0514 Marker name in barley OPA2 = 12_30514 Description for best rice BLAST hit to Unigene 35 member = protein glycine-rich protein, putative, expressed; E value = 1E-143 BLAST hit in the rice genome = glycine-rich protein, putative, expressed
Probe for Locus	HAR35_2098
Locus	POPA3_0514
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare