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GrainGenes Marker Report: POPA3_0517

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Locus	POPA3_0517
Type	SNP
Synonym	Other name 12_30517 BOPA2_12_30517 Synonym 12_30517
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 130.6 Hordeum-OPA-2009-1H 135.56 Hordeum-OPA123-2008-1H 135.56
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16551 i_12_30517
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0517 Marker name in barley OPA1 = 12_30517 Original SNP name = U32_3959_548 Most representative HarvEST:Barley Assembly #32 Unigene = 3959 Most representative HarvEST:Barley Assembly #35 Unigene = 16551 HarvEST Unigene 35 Probe Set = Contig5542_at Unigene 35 Rice Locus = LOC_Os07g08430 Description for best rice BLAST hit to Unigene 35 member = indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed; E value = 1E-144 Marker name in barley Pilot OPA3 = 3_0517 Marker name in barley OPA2 = 12_30517 Original SNP name = ABC20718_1_107 Description for best rice BLAST hit to Unigene 35 member = protein indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed; E value = 1E-144 BLAST hit in the rice genome = indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_16551
Locus	POPA3_0517
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare