GrainGenes Marker Report: POPA3_0528
Locus
POPA3_0528
Type
SNP
Synonym
Synonym 12_30528
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H 49.68 Hordeum-OPA123-2008-7H 49.68 Hordeum-OPAConsensus-2011-7H 42.26
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_2184
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0528 Marker name in barley OPA1 = 12_30528 Original SNP name = U32_4123_1240 Most representative HarvEST:Barley Assembly #32 Unigene = 4123 Most representative HarvEST:Barley Assembly #35 Unigene = 2184 HarvEST Unigene 35 Probe Set = Contig5698_at; S0000200058A04F1_s_at Unigene 35 Rice Locus = LOC_Os06g08005 Marker name in barley Pilot OPA3 = 3_0528 Marker name in barley OPA2 = 12_30528 HarvEST Unigene 35 Probe Set = Contig5698_at, S0000200058A04F1_s_at Description for best rice BLAST hit to Unigene 35 member = protein transferase, transferring glycosyl groups, putative, expressed; E value = 1E-180 BLAST hit in the rice genome = transferase, transferring glycosyl groups, putative, expressed
Probe for Locus
HAR35_2184
Locus
POPA3_0528
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA3_0528
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