GrainGenes Marker Report: POPA3_0537
Locus
POPA3_0537
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H 87.71 Hordeum-OPA-2009-5H 108.18 Hordeum-OPA123-2008-5H 108.18 Hordeum-OPAConsensus-2011-5H 96.12
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_2349
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0537 Most representative HarvEST:Barley Assembly #32 Unigene = 4283 Most representative HarvEST:Barley Assembly #35 Unigene = 2349 HarvEST Unigene 35 Probe Set = Contig5939_at Unigene 35 Rice Locus = LOC_Os12g12470 Description for best rice BLAST hit to Unigene 35 member = NADP-dependent oxidoreductase P1, putative, expressed; E value = 1E-146 Marker name in barley Pilot OPA3 = 3_0537 Description for best rice BLAST hit to Unigene 35 member = protein NADP-dependent oxidoreductase P1, putative, expressed; E value = 1E-146 BLAST hit in the rice genome = NADP-dependent oxidoreductase P1, putative, expressed
Probe for Locus
HAR35_2349
Locus
POPA3_0537
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA3_0537
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