Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0543

[Submit comment/correction]

Locus	POPA3_0543
Type	SNP
Synonym	Other name 12_30543 BOPA2_12_30543 Synonym 12_30543
Chromosome	5H
Chromosome Arm	5HS
Map	Barley, 2012 9KSNP 5H 0 Hordeum-OPA-2009-5H 2.81 Hordeum-OPA123-2008-5H 2.81 Hordeum-OPAConsensus-2011-5H 1.91
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16960 i_12_30543
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0543 Marker name in barley OPA1 = 12_30543 Original SNP name = U32_4362_135 Most representative HarvEST:Barley Assembly #32 Unigene = 4362 Most representative HarvEST:Barley Assembly #35 Unigene = 16960 HarvEST Unigene 35 Probe Set = Contig6056_s_at Unigene 35 Rice Locus = LOC_Os05g11140 Description for best rice BLAST hit to Unigene 35 member = ATP binding protein, putative, expressed; E value = 1E-101 Marker name in barley Pilot OPA3 = 3_0543 Marker name in barley OPA2 = 12_30543 Description for best rice BLAST hit to Unigene 35 member = protein ATP binding protein, putative, expressed; E value = 1E-101 BLAST hit in the rice genome = ATP binding protein, putative, expressed
Probe for Locus	HAR35_16960
Locus	POPA3_0543
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare