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GrainGenes Marker Report: POPA3_0562

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Locus	POPA3_0562
Type	SNP
Synonym	Other name 12_30562 BOPA2_12_30562 Synonym 12_30562
Chromosome	1H
Chromosome Arm	1HO
Map	Barley, 2012 9KSNP 1H 48.1 Hordeum-OPA-2009-1H 50 Hordeum-OPA123-2008-1H 50 Hordeum-OPAConsensus-2011-1H 42.42 Hordeum-OWB-OPA2008-1H 57.714
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_540 i_12_30562
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0562 Marker name in barley OPA1 = 12_30562 Original SNP name = U32_4758_440 Most representative HarvEST:Barley Assembly #32 Unigene = 4758 Most representative HarvEST:Barley Assembly #35 Unigene = 540 HarvEST Unigene 35 Probe Set = Contig6483_at; Contig6483_s_at Unigene 35 Rice Locus = LOC_Os10g05720 Description for best rice BLAST hit to Unigene 35 member = lipid binding protein, putative, expressed; E value = 2E-30 Marker name in barley Pilot OPA3 = 3_0562 Marker name in barley OPA2 = 12_30562 HarvEST Unigene 35 Probe Set = Contig6483_at, Contig6483_s_at Description for best rice BLAST hit to Unigene 35 member = protein lipid binding protein, putative, expressed; E value = 2E-30 BLAST hit in the rice genome = lipid binding protein, putative, expressed
Probe for Locus	HAR35_540
Locus	POPA3_0562
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare