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GrainGenes Marker Report: POPA3_0566

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Locus	POPA3_0566
Type	SNP
Synonym	Other name 12_30566 BOPA2_12_30566 Synonym 12_30566
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 171.66 Hordeum-OPA123-2008-5H 171.66 Hordeum-OPAConsensus-2011-5H 162.68
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1973 i_12_30566
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 3_0566 Marker name in barley OPA1 = 12_30566 Original SNP name = U32_4897_828 Most representative HarvEST:Barley Assembly #32 Unigene = 4897 Most representative HarvEST:Barley Assembly #35 Unigene = 1973 HarvEST Unigene 35 Probe Set = Contig6668_s_at Unigene 35 Rice Locus = LOC_Os03g60740 Marker name in barley Pilot OPA3 = 3_0566 Marker name in barley OPA2 = 12_30566 Description for best rice BLAST hit to Unigene 35 member = protein NAD-dependent epimerase/dehydratase, putative, expressed; E value = 1E-130 BLAST hit in the rice genome = NAD-dependent epimerase/dehydratase, putative, expressed
Probe for Locus	HAR35_1973
Locus	POPA3_0566
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare