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GrainGenes Marker Report: POPA3_0577

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Locus
POPA3_0577
Type
SNP
Synonym
Other name12_30577
BOPA2_12_30577
Synonym12_30577
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H182.88
Hordeum-OPA123-2008-5H182.88
Hordeum-OPAConsensus-2011-5H177.9
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_2562
i_12_30577
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_0577
Marker name in barley OPA1 = 12_30577
Original SNP name = U32_5031_1217
Most representative HarvEST:Barley Assembly #32 Unigene = 5031
Most representative HarvEST:Barley Assembly #35 Unigene = 2562
HarvEST Unigene 35 Probe Set = Contig6912_s_at; Contig6913_x_at
Unigene 35 Rice Locus = LOC_Os05g29860
Description for best rice BLAST hit to Unigene 35 member = mitochondrial carrier C12B10.09, putative, expressed; E value = 1E-142
Marker name in barley Pilot OPA3 = 3_0577
Marker name in barley OPA2 = 12_30577
HarvEST Unigene 35 Probe Set = Contig6912_s_at, Contig6913_x_at
Description for best rice BLAST hit to Unigene 35 member = protein mitochondrial carrier C12B10.09, putative, expressed; E value = 1E-142
BLAST hit in the rice genome = mitochondrial carrier C12B10.09, putative, expressed


Probe for Locus
HAR35_2562
Locus
POPA3_0577
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare