Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0620

[Submit comment/correction]

Locus	POPA3_0620
Type	SNP
Synonym	Other name 12_30620 BOPA2_12_30620 Synonym 12_30620
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 60.1 Hordeum-OPA-2009-4H 65.05 Hordeum-OPA123-2008-4H 65.05 Hordeum-OPAConsensus-2011-4H 76.31
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3076 i_12_30620
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0620 Marker name in barley OPA1 = 12_30620 Original SNP name = U32_5849_1360 Most representative HarvEST:Barley Assembly #32 Unigene = 5849 Most representative HarvEST:Barley Assembly #35 Unigene = 3076 HarvEST Unigene 35 Probe Set = Contig7936_at Unigene 35 Rice Locus = LOC_Os03g13040 Description for best rice BLAST hit to Unigene 35 member = haemolysin-III related family protein, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0620 Marker name in barley OPA2 = 12_30620 Description for best rice BLAST hit to Unigene 35 member = protein haemolysin-III related family protein, expressed; E value = 0 BLAST hit in the rice genome = haemolysin-III related family protein, expressed
Probe for Locus	HAR35_3076
Locus	POPA3_0620
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare