Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0622

[Submit comment/correction]

Locus	POPA3_0622
Type	SNP
Synonym	Other name 12_30622 BOPA2_12_30622 Synonym 12_30622
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_3450 i_12_30622
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0622 Marker name in barley OPA1 = 12_30622 Original SNP name = U32_5858_1366 Most representative HarvEST:Barley Assembly #32 Unigene = 5858 Most representative HarvEST:Barley Assembly #35 Unigene = 3450 HarvEST Unigene 35 Probe Set = Contig8050_at; Contig8050_s_at Unigene 35 Rice Locus = LOC_Os01g17214 Description for best rice BLAST hit to Unigene 35 member = carbohydrate transporter/ sugar porter/ transporter, putative, expressed; E value = 0 BLAST hit in the rice genome = carbohydrate transporter/ sugar porter/ transporter, putative, expressed
Probe for Locus	HAR35_3450
Locus	POPA3_0622