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GrainGenes Marker Report: POPA3_0651

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Locus
POPA3_0651
Type
SNP
Synonym
Other name12_30651
BOPA2_12_30651
Synonym12_30651
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H4.41
Hordeum-OPA123-2008-6H4.41
Hordeum-OPAConsensus-2011-6H7.87
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_17981
i_12_30651
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0651
Marker name in barley OPA1 = 12_30651
Original SNP name = U32_6479_2874
Most representative HarvEST:Barley Assembly #32 Unigene = 6479
Most representative HarvEST:Barley Assembly #35 Unigene = 17981
HarvEST Unigene 35 Probe Set = Contig8716_at
Unigene 35 Rice Locus = LOC_Os08g36480
Description for best rice BLAST hit to Unigene 35 member = nitrate reductase 1, putative, expressed; E value = 0
Marker name in barley Pilot OPA3 = 3_0651
Marker name in barley OPA2 = 12_30651
Description for best rice BLAST hit to Unigene 35 member = protein nitrate reductase 1, putative, expressed; E value = 0
BLAST hit in the rice genome = nitrate reductase 1, putative, expressed


Probe for Locus
HAR35_17981
Locus
POPA3_0651
Synonym
SynonympMJ4.1
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare