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GrainGenes Marker Report: POPA3_0677

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Locus
POPA3_0677
Type
SNP
Synonym
Other name12_30677
BOPA2_12_30677
Synonym12_30677
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H68.2
Hordeum-OPA-2009-3H81.66
Hordeum-OPA123-2008-3H81.66
Hordeum-OPAConsensus-2011-3H93.81
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3906
i_12_30677
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0677
Marker name in barley OPA1 = 12_30677
Original SNP name = U32_7048_390
Most representative HarvEST:Barley Assembly #32 Unigene = 7048
Most representative HarvEST:Barley Assembly #35 Unigene = 3906
HarvEST Unigene 35 Probe Set = Contig9198_at
Unigene 35 Rice Locus = LOC_Os01g56580
Description for best rice BLAST hit to Unigene 35 member = ATP binding protein, putative, expressed; E value = 3E-65
Marker name in barley Pilot OPA3 = 3_0677
Marker name in barley OPA2 = 12_30677
Description for best rice BLAST hit to Unigene 35 member = protein ATP binding protein, putative, expressed; E value = 3E-65
BLAST hit in the rice genome = ATP binding protein, putative, expressed


Probe for Locus
HAR35_3906
Locus
POPA3_0677
Synonym
SynonymCDO281
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare