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GrainGenes Marker Report: POPA3_0693

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Locus	POPA3_0693
Type	SNP
Synonym	Other name 12_30693 BOPA2_12_30693 Synonym 12_30693
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 64 Hordeum-OPA-2009-4H 68.21 Hordeum-OPA123-2008-4H 68.21 Hordeum-OPAConsensus-2011-4H 79.47
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4436 i_12_30693
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0693 Marker name in barley OPA1 = 12_30693 Original SNP name = U32_7224_971 Most representative HarvEST:Barley Assembly #32 Unigene = 7224 Most representative HarvEST:Barley Assembly #35 Unigene = 4436 HarvEST Unigene 35 Probe Set = Contig9611_at Unigene 35 Rice Locus = LOC_Os03g11100 Description for best rice BLAST hit to Unigene 35 member = golgi transport 1 protein B, putative, expressed; E value = 1E-76 Marker name in barley Pilot OPA3 = 3_0693 Marker name in barley OPA2 = 12_30693 Original SNP name = U35_98_423 Description for best rice BLAST hit to Unigene 35 member = protein golgi transport 1 protein B, putative, expressed; E value = 1E-76 BLAST hit in the rice genome = golgi transport 1 protein B, putative, expressed
Probe for Locus	HAR35_4436
Locus	POPA3_0693
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare